cassiopeia.solver.dissimilarity_functions.hamming_similarity_normalized_over_missing¶
- cassiopeia.solver.dissimilarity_functions.hamming_similarity_normalized_over_missing(s1, s2, missing_state_indicator, weights=None)[source]¶
A function to return the number of (non-missing) character/state mutations shared by two samples, normalized over the amount of missing data.
- Parameters
- s1 :
List[int]List[int] Character states of the first sample
- s2 :
List[int]List[int] Character states of the second sample
- missing_state_indicator :
intint The character representing missing values
- weights : {
int: {int:float}},NoneOptional[Dict[int,Dict[int,float]]] (default:None) A set of optional weights to weight the similarity of a mutation
- s1 :
- Return type
- Returns
The number of shared mutations between two samples normalized over the number of missing data events, weighted or unweighted